Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP_2016Oxidoreductase, FAD/FMN-binding; Identified by match to protein family HMM PF00724. (372 aa)    
Predicted Functional Partners:
ACP_0764
Electron transfer flavoprotein, beta subunit; Identified by match to protein family HMM PF01012.
  
 
 0.769
ACP_2017
Transcription regulator protein; Identified by match to protein family HMM PF00376.
  
    0.550
fadB
Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
  
  
 0.511
etfA
Electron transfer flavoprotein, alpha subunit; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
   
 
 0.487
ACP_2015
Conserved hypothetical protein; Identified by match to protein family HMM PF04519.
       0.418
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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