Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ACP_1162 | ACP_2050 | Nonribosomal peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733. | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | 0.440 |
ACP_1860 | ACP_2050 | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | 0.491 |
ACP_2049 | ACP_2050 | Response regulators of cell autolysis; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | 0.697 |
ACP_2050 | ACP_1162 | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | Nonribosomal peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733. | 0.440 |
ACP_2050 | ACP_1860 | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.491 |
ACP_2050 | ACP_2049 | Conserved domain protein; Identified by similarity to GB:AAQ66653.1. | Response regulators of cell autolysis; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | 0.697 |