STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_2129Hypothetical protein; Identified by glimmer; putative. (822 aa)    
Predicted Functional Partners:
ACP_0623
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.875
ACP_2127
RDD domain protein; Identified by match to protein family HMM PF06271.
 
     0.836
ACP_2584
Tetratricopeptide repeat protein.
 
  
 0.778
ACP_0602
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
  
 0.776
ACP_2128
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACP_2419
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
  
 0.766
ACP_0604
Conserved domain protein; Identified by similarity to GB:CAE80296.1; match to protein family HMM PF04357.
 
   
 0.748
ACP_2773
Hypothetical protein; Identified by glimmer; putative.
  
     0.737
ACP_1808
Hypothetical protein; Identified by glimmer; putative.
 
     0.729
ACP_1760
Hypothetical protein; Identified by glimmer; putative.
 
     0.724
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.