Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP_2136Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. (144 aa)    
Predicted Functional Partners:
ACP_2138
Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
 
 0.970
ACP_0505
Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
 
 0.953
ACP_2137
Transport energizing protein, ExbD/TolR family; Identified by similarity to SP:Q05606; match to protein family HMM PF02472.
 
    
0.787
ACP_2139
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.712
ACP_0502
tolB protein, putative; Identified by similarity to SP:P19935; match to protein family HMM PF07676; match to protein family HMM TIGR02800.
 
  
 0.708
pal
Identified by match to protein family HMM PF00691; Belongs to the Pal lipoprotein family.
 
 
 
 0.703
ACP_2584
Tetratricopeptide repeat protein.
 
    0.691
ACP_1393
Identified by match to protein family HMM PF00691.
 
 
 
 0.632
ACP_0500
Transporter auxiliary protein, TonB-ExbB-ExbD/TolA-TolQ-TolR (TonB) family.
 
  
 0.605
ACP_3477
Identified by match to protein family HMM TIGR01352.
 
 
 0.595
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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