STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_2171class-I glutamine amidotransferase family protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722. (249 aa)    
Predicted Functional Partners:
gidB
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.787
ACP_2170
Identified by match to protein family HMM PF01553.
       0.648
ACP_2169
Tetrahydrofolate synthase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.
  
  
 0.566
ACP_0595
Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951.
  
  
 0.479
ACP_1250
Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951.
  
  
 0.479
ACP_2632
Helix-turn-helix/cupin domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
  
 0.438
ACP_2577
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
     
 0.402
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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