STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_2791Putative L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596. (228 aa)    
Predicted Functional Partners:
araB
Ribulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.
 
 
 0.986
xylB
Xylulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.952
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.914
uxaC
Glucuronate isomerase; Identified by match to protein family HMM PF02614.
     
 0.826
ACP_2677
Endo-polygalacturonase/pectinesterase; Identified by match to protein family HMM PF00295; match to protein family HMM PF01095.
     
  0.800
ACP_0559
Rhamnulokinase; Identified by similarity to SP:P32171; match to protein family HMM PF00370.
 
  
 0.554
ACP_2792
Conserved hypothetical protein; Identified by similarity to GB:AAO75244.1; match to protein family HMM PF07944; match to protein family HMM TIGR01409.
 
     0.552
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.535
ACP_1004
Homocysteine S-methyltransferase/methylenetetrahydrofolate reductase; Identified by match to protein family HMM PF02219; match to protein family HMM PF02574.
  
  
 0.502
ACP_2788
Putative L-fucose isomerase.
 
  
 0.471
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.