STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3016Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723. (627 aa)    
Predicted Functional Partners:
gdh
Glucose 1-dehydrogenase; Identified by similarity to SP:P12310; match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
       0.773
otsA
Alpha,alpha-trehalose-phosphate synthase; Identified by similarity to SP:Q92410; match to protein family HMM PF00982.
 
   
 0.715
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.684
ACP_0842
Trehalose synthase/probable maltokinase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457.
 
   
 0.630
ACP_3014
Hypothetical protein; Identified by glimmer; putative.
       0.485
ACP_1907
Transporter, small conductance mechanosensitive ion channel family; Identified by match to protein family HMM PF00924.
  
    0.479
ACP_3017
Putative membrane protein; Identified by match to protein family HMM PF01925.
       0.434
ACP_3019
Conserved hypothetical protein; Identified by similarity to GB:AAM71980.1; match to protein family HMM PF07843.
       0.434
ACP_3012
Polysaccharide deacetylase domain protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF01522.
     
 0.416
ACP_0206
Putative clavaldehyde dehydrogenase; Identified by similarity to GB:AAF86624.1; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.400
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.