STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3030Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03471. (492 aa)    
Predicted Functional Partners:
ACP_3029
Conserved hypothetical protein; Identified by similarity to GB:AAR34528.1.
 
    0.789
ACP_2005
Glycosyl tranferase, homolog; Identified by similarity to GB:CAH34282.1; match to protein family HMM TIGR03472.
 
     0.778
ACP_0805
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535; match to protein family HMM TIGR03472.
 
     0.765
ACP_1042
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
     0.763
shc
Squalene-hopene cyclase; Identified by similarity to SP:P33247; similarity to GB:BAA25185.1; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
 
   
 0.760
ACP_0818
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; match to protein family HMM PF08659; match to protein family HMM TIGR03466.
  
     0.748
ACP_3330
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03470.
 
  
 0.738
ACP_0759
Conserved hypothetical protein; Identified by similarity to GB:AAV89598.1; match to protein family HMM PF04794.
 
   
 0.735
ACP_3037
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
     0.590
ACP_3295
Conserved hypothetical protein; Identified by similarity to GB:AAR34528.1.
 
    0.585
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.