Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ACP_0871 | ACP_3073 | Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652. | Conserved hypothetical protein; Identified by similarity to GB:BAC67912.1. | 0.501 |
ACP_0871 | ACP_3074 | Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.497 |
ACP_2621 | ACP_3074 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.411 |
ACP_3073 | ACP_0871 | Conserved hypothetical protein; Identified by similarity to GB:BAC67912.1. | Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652. | 0.501 |
ACP_3073 | ACP_3074 | Conserved hypothetical protein; Identified by similarity to GB:BAC67912.1. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.846 |
ACP_3074 | ACP_0871 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652. | 0.497 |
ACP_3074 | ACP_2621 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.411 |
ACP_3074 | ACP_3073 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Conserved hypothetical protein; Identified by similarity to GB:BAC67912.1. | 0.846 |
ACP_3074 | ACP_3075 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Conserved hypothetical protein; Identified by similarity to GB:CAD73230.1; match to protein family HMM PF07632. | 0.424 |
ACP_3075 | ACP_3074 | Conserved hypothetical protein; Identified by similarity to GB:CAD73230.1; match to protein family HMM PF07632. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.424 |