STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3094Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732. (550 aa)    
Predicted Functional Partners:
ACP_3093
Conserved hypothetical protein; Identified by similarity to GB:AAS03703.1.
   
 0.960
ACP_3092
Putative membrane protein.
 
     0.880
ACP_0600
Putative membrane protein; Identified by similarity to GB:AAV82079.1.
    
 0.704
ACP_2939
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 0.704
ACP_2167
Putative lipoprotein.
    
 0.699
ACP_2769
Conserved domain protein; Identified by similarity to GB:BAC89906.1; match to protein family HMM PF07494.
    
 0.699
ACP_3091
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
 
     0.676
ACP_1157
Polyketide synthase peptide synthetase fusion protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733.
 
   
 0.519
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
       0.495
ACP_0532
Identified by match to protein family HMM PF00034.
   
 
 0.475
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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