STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3108Fimbrial assembly protein, PilN family; Identified by match to protein family HMM PF05137. (242 aa)    
Predicted Functional Partners:
ACP_3109
Conserved hypothetical protein.
  
 
 0.985
ACP_3110
Type 4 fimbrial assembly protein; Identified by similarity to GB:AAT00614.1; match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.956
ACP_3111
Putative type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAT00616.1; match to protein family HMM PF00482.
   
 
 0.931
ACP_0253
GSP E family; Identified by match to protein family HMM PF05157.
  
 
 0.813
ACP_3106
Hypothetical protein; Identified by glimmer; putative.
       0.800
ACP_3105
Putative secretion/fimbrial assembly protein; Identified by similarity to GB:AAM62417.1.
  
  
 0.774
ACP_3107
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACP_3114
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.555
ACP_3112
Conserved hypothetical protein; Identified by similarity to GB:AAK22487.1.
       0.507
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.