STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3144Transporter, TatB family; Identified by match to protein family HMM PF02416. (180 aa)    
Predicted Functional Partners:
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
 
 
 0.992
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.972
ACP_1823
Peptidase S54 (rhomboid) family protein, nonpeptidase homolog; Identified by match to protein family HMM PF01694.
   
 
 0.519
ACP_3298
Peptidase, S54 (rhomboid) family; Identified by match to protein family HMM PF01694.
   
 
 0.519
nadA
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
     
 0.461
ACP_1385
TonB family C-terminal domain protein; Identified by match to protein family HMM TIGR01352.
  
 
   0.440
ACP_1961
Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.
  
   
 0.405
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.