Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3207Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR03434. (878 aa)    
Predicted Functional Partners:
ACP_2501
Efflux transporter, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
    0.827
ACP_2502
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.806
ACP_2504
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.794
ACP_1370
Efflux ABC transporter, macrolide exporter (MacB) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.765
ACP_0907
ABC-type transport system, involved in lipoprotein release, permease components; Identified by match to protein family HMM PF02687.
  
     0.748
ACP_1369
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.
  
    0.745
ACP_1853
Permease subunit of a ABC-type transport system involved in lipoprotein release, putative; Identified by match to protein family HMM PF02687.
  
     0.732
ACP_0883
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.720
ACP_2507
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.709
ACP_0524
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.659
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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