STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3238Conserved domain protein; Identified by similarity to GB:CAH17350.1. (664 aa)    
Predicted Functional Partners:
ACP_3239
Conjugative relaxase domain protein; Identified by match to protein family HMM PF08751; match to protein family HMM TIGR02686.
 
   
 0.946
ACP_3167
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.786
ACP_3261
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.785
ACP_3182
Conjugative relaxase domain protein; Identified by match to protein family HMM PF08751; match to protein family HMM TIGR02686.
 
   
 0.784
ACP_0663
DNA helicase domain protein.
 
   
 0.783
ACP_1195
Conjugative relaxase domain protein; Identified by match to protein family HMM PF08751; match to protein family HMM TIGR02686.
 
   
 0.783
ACP_0417
Hypothetical protein; Identified by glimmer; putative.
  
     0.773
ACP_3237
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACP_2366
Putative bacteriophage portal protein; Identified by match to protein family HMM PF04860.
  
     0.772
ACP_0386
Hypothetical protein; Identified by glimmer; putative.
  
     0.767
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.