STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000172155_00120Unannotated protein. (271 aa)    
Predicted Functional Partners:
GCA_000172155_02703
Unannotated protein.
  
 0.883
GCA_000172155_01491
Unannotated protein.
  
 0.878
GCA_000172155_05688
Unannotated protein.
     
 0.816
GCA_000172155_00269
Unannotated protein.
  
     0.769
GCA_000172155_05036
Unannotated protein.
  
 0.766
GCA_000172155_03795
Unannotated protein.
  
 0.765
GCA_000172155_02874
Unannotated protein.
   
  0.762
GCA_000172155_00100
Unannotated protein.
     
 0.757
GCA_000172155_01233
Unannotated protein.
    
  0.741
GCA_000172155_04135
Unannotated protein.
    
  0.740
Your Current Organism:
Verrucomicrobium spinosum
NCBI taxonomy Id: 240016
Other names: V. spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum ATCC 43997, Verrucomicrobium spinosum DSM 4136, Verrucomicrobium spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum JCM 18804, Verrucomicrobium spinosum JCM 18804 = DSM 4136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.