STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000172155_00299Unannotated protein. (554 aa)    
Predicted Functional Partners:
GCA_000172155_01555
Unannotated protein.
  
  
  0.799
GCA_000172155_06112
Unannotated protein.
  
  
  0.794
GCA_000172155_02703
Unannotated protein.
  
 0.620
GCA_000172155_05963
Unannotated protein.
  
     0.560
GCA_000172155_02030
Unannotated protein.
  
     0.543
GCA_000172155_01491
Unannotated protein.
    
 0.523
GCA_000172155_05804
Unannotated protein.
  
     0.493
GCA_000172155_00995
Unannotated protein.
  
     0.445
GCA_000172155_05354
Unannotated protein.
  
     0.424
GCA_000172155_03145
Unannotated protein.
 
     0.408
Your Current Organism:
Verrucomicrobium spinosum
NCBI taxonomy Id: 240016
Other names: V. spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum ATCC 43997, Verrucomicrobium spinosum DSM 4136, Verrucomicrobium spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum JCM 18804, Verrucomicrobium spinosum JCM 18804 = DSM 4136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.