STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000172155_02779Unannotated protein. (846 aa)    
Predicted Functional Partners:
GCA_000172155_02780
Unannotated protein.
 
  
  0.879
GCA_000172155_01497
Unannotated protein.
  
 
 0.859
GCA_000172155_05884
Unannotated protein.
  
 
 0.859
GCA_000172155_02694
Unannotated protein.
 
  
 0.630
GCA_000172155_02778
Unannotated protein.
 
  
  0.612
GCA_000172155_02781
Unannotated protein.
       0.580
GCA_000172155_02777
Unannotated protein.
 
  
  0.545
GCA_000172155_06575
Unannotated protein.
 
 
  0.540
GCA_000172155_02857
Unannotated protein.
 
 
  0.535
GCA_000172155_02776
Unannotated protein.
 
  
  0.533
Your Current Organism:
Verrucomicrobium spinosum
NCBI taxonomy Id: 240016
Other names: V. spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum ATCC 43997, Verrucomicrobium spinosum DSM 4136, Verrucomicrobium spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum JCM 18804, Verrucomicrobium spinosum JCM 18804 = DSM 4136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.