STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000172155_05182Unannotated protein. (320 aa)    
Predicted Functional Partners:
GCA_000172155_05181
Unannotated protein.
     0.994
GCA_000172155_06500
Unannotated protein.
 
 
0.778
GCA_000172155_05685
Unannotated protein.
   
 
  0.686
GCA_000172155_01445
Unannotated protein.
  
  0.590
GCA_000172155_05180
Unannotated protein.
       0.588
GCA_000172155_03784
Unannotated protein.
  
  0.579
GCA_000172155_00894
Unannotated protein.
   
  0.524
GCA_000172155_05146
Unannotated protein.
   
  0.524
GCA_000172155_06281
Unannotated protein.
   
  0.524
GCA_000172155_02703
Unannotated protein.
     
 0.470
Your Current Organism:
Verrucomicrobium spinosum
NCBI taxonomy Id: 240016
Other names: V. spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum ATCC 43997, Verrucomicrobium spinosum DSM 4136, Verrucomicrobium spinosum DSM 4136 = JCM 18804, Verrucomicrobium spinosum JCM 18804, Verrucomicrobium spinosum JCM 18804 = DSM 4136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.