STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_003554Maspardin Spastic paraplegia 21 autosomal recessive. (346 aa)    
Predicted Functional Partners:
D9C73_020346
Tectonin beta-propeller repeat-containing protein 2 WD repeat-containing protein KIAA0329/KIAA0297.
      
 0.566
D9C73_028020
Spatacsin Colorectal carcinoma-associated protein.
      
 0.564
D9C73_024175
ATP synthase mitochondrial F1 complex assembly factor 2.
   
   0.562
D9C73_016596
Tumor necrosis factor TNF-alpha.
      
 0.560
D9C73_004320
Paraplegin.
      
 0.558
D9C73_014892
Spartin Spastic paraplegia 20 protein.
      
 0.523
D9C73_016995
Spartin Spastic paraplegia 20 protein; Belongs to the cyclin family.
      
 0.512
D9C73_008919
Magnesium transporter NIPA1.
      
 0.506
D9C73_019244
Deoxyribose-phosphate aldolase.
      
 0.495
D9C73_020798
Akirin-2.
    
   0.481
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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