STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_005728LIM and cysteine-rich domains protein 1. (359 aa)    
Predicted Functional Partners:
D9C73_010994
GATA-binding factor 5-A.
    
 0.742
D9C73_011004
GATA-binding factor 5-A.
    
 0.742
D9C73_009448
Transcription factor GATA-4 GATA-binding factor 4.
    
 0.742
D9C73_005511
GATA-binding factor 2.
    
 0.697
D9C73_024648
Transcription factor GATA-3 GATA-binding factor 3.
    
 0.697
D9C73_010813
Segment polarity protein dishevelled-like protein DVL-1.
    
 0.614
D9C73_013758
Segment polarity protein dishevelled-like protein DVL-3.
    
 0.614
D9C73_013749
Segment polarity protein dishevelled-like protein DVL-3.
    
 0.614
D9C73_027136
Segment polarity protein dishevelled-like protein DVL-2.
    
 0.614
D9C73_028424
Segment polarity protein dishevelled-like protein DVL-3.
    
 0.614
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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