STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_004782Interferon regulatory factor 6. (491 aa)    
Predicted Functional Partners:
D9C73_003589
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.931
D9C73_005038
Sulfite oxidase, mitochondrial.
     
 0.779
D9C73_021828
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.752
D9C73_021893
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.694
D9C73_017770
Receptor-interacting serine/threonine-protein kinase 4.
   
 0.685
D9C73_017913
Receptor-interacting serine/threonine-protein kinase 4.
   
 0.685
D9C73_024514
Serine/threonine-protein kinase TBK1.
   
 0.654
D9C73_006747
Stimulator of interferon genes protein.
   
 0.623
D9C73_022643
Histone-binding protein RBBP4.
   
 0.614
D9C73_022680
Histone-binding protein RBBP4.
   
 0.614
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.