STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_008473E3 ubiquitin-protein ligase UHRF1. (830 aa)    
Predicted Functional Partners:
D9C73_025692
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
 0.978
D9C73_026079
Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family.
    
 
 0.902
D9C73_014328
DNA ligase 1.
   
 
 0.875
D9C73_006832
Proliferating cell nuclear antigen.
   
   0.744
D9C73_012856
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
   0.744
D9C73_020900
Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family.
    
 
 0.676
D9C73_020915
Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family.
    
 
 0.676
D9C73_003489
Centromere protein.
   
 0.599
D9C73_002872
Histone H3; Belongs to the histone H3 family.
   
 0.594
D9C73_017826
Histone H3; Belongs to the histone H3 family.
   
 0.594
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.