STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_016156RUN domain-containing protein 3B. (449 aa)    
Predicted Functional Partners:
D9C73_019798
WD repeat-and FYVE domain-containing protein 4.
   
 
  0.822
D9C73_019775
WD repeat-and FYVE domain-containing protein 4.
   
 
  0.822
D9C73_019796
WD repeat-and FYVE domain-containing protein 4.
   
 
  0.822
D9C73_019777
WD repeat-and FYVE domain-containing protein 4.
   
 
  0.822
D9C73_017780
UV radiation resistance-associated gene protein p63.
    
 0.739
D9C73_017904
UV radiation resistance-associated gene protein p63.
    
 0.739
D9C73_016154
Peroxisomal carnitine O-octanoyltransferase.
      
 0.556
D9C73_016155
Multidrug resistance protein 1.
   
  
 0.524
D9C73_008755
Run domain.
     
 0.519
D9C73_022290
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.511
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.