D9C73_017933 protein (Collichthys lucidus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D9C73_017933

Heat shock cognate 70 kDa protein; Belongs to the heat shock protein 70 family. (654 aa)

Predicted Functional Partners:

D9C73_017687

0.936

D9C73_027415

0.932

D9C73_012767

0.924

D9C73_012762

0.924

D9C73_025181

0.897

D9C73_007553

0.894

D9C73_003784

0.893

D9C73_007462

0.893

D9C73_002263

0.891

D9C73_000760

0.882

Your Current Organism:

Collichthys lucidus

NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D9C73_000760	D9C73_002263	A0A4U5U1I2	A0A4U5U5P3	DnaJ-like protein subfamily C member 10.	DnaJ-like protein subfamily A member 1.	0.668
D9C73_000760	D9C73_003784	A0A4U5U1I2	A0A4U5U619	DnaJ-like protein subfamily C member 10.	DnaJ-like protein subfamily A member 2.	0.668
D9C73_000760	D9C73_007462	A0A4U5U1I2	A0A4U5UFQ4	DnaJ-like protein subfamily C member 10.	DnaJ-like protein subfamily A member 2.	0.668
D9C73_000760	D9C73_007553	A0A4U5U1I2	A0A4U5UFJ3	DnaJ-like protein subfamily C member 10.	DnaJ-like protein subfamily A member 4.	0.668
D9C73_000760	D9C73_012762	A0A4U5U1I2	A0A4V6ASP9	DnaJ-like protein subfamily C member 10.	Cyclin-G-associated kinase.	0.887
D9C73_000760	D9C73_012767	A0A4U5U1I2	A0A4U5UTC6	DnaJ-like protein subfamily C member 10.	Cyclin-G-associated kinase.	0.887
D9C73_000760	D9C73_017687	A0A4U5U1I2	A0A4U5V6L2	DnaJ-like protein subfamily C member 10.	Stress-induced-phosphoprotein 1.	0.575
D9C73_000760	D9C73_017933	A0A4U5U1I2	A0A4U5V8R5	DnaJ-like protein subfamily C member 10.	Heat shock cognate 70 kDa protein; Belongs to the heat shock protein 70 family.	0.882
D9C73_000760	D9C73_025181	A0A4U5U1I2	A0A4U5VR01	DnaJ-like protein subfamily C member 10.	DnaJ-like protein subfamily C member 2.	0.917
D9C73_000760	D9C73_027415	A0A4U5U1I2	A0A4U5VVD3	DnaJ-like protein subfamily C member 10.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.921
D9C73_002263	D9C73_000760	A0A4U5U5P3	A0A4U5U1I2	DnaJ-like protein subfamily A member 1.	DnaJ-like protein subfamily C member 10.	0.668
D9C73_002263	D9C73_003784	A0A4U5U5P3	A0A4U5U619	DnaJ-like protein subfamily A member 1.	DnaJ-like protein subfamily A member 2.	0.867
D9C73_002263	D9C73_007462	A0A4U5U5P3	A0A4U5UFQ4	DnaJ-like protein subfamily A member 1.	DnaJ-like protein subfamily A member 2.	0.867
D9C73_002263	D9C73_012762	A0A4U5U5P3	A0A4V6ASP9	DnaJ-like protein subfamily A member 1.	Cyclin-G-associated kinase.	0.475
D9C73_002263	D9C73_012767	A0A4U5U5P3	A0A4U5UTC6	DnaJ-like protein subfamily A member 1.	Cyclin-G-associated kinase.	0.475
D9C73_002263	D9C73_017687	A0A4U5U5P3	A0A4U5V6L2	DnaJ-like protein subfamily A member 1.	Stress-induced-phosphoprotein 1.	0.920
D9C73_002263	D9C73_017933	A0A4U5U5P3	A0A4U5V8R5	DnaJ-like protein subfamily A member 1.	Heat shock cognate 70 kDa protein; Belongs to the heat shock protein 70 family.	0.891
D9C73_002263	D9C73_025181	A0A4U5U5P3	A0A4U5VR01	DnaJ-like protein subfamily A member 1.	DnaJ-like protein subfamily C member 2.	0.776
D9C73_002263	D9C73_027415	A0A4U5U5P3	A0A4U5VVD3	DnaJ-like protein subfamily A member 1.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.768
D9C73_003784	D9C73_000760	A0A4U5U619	A0A4U5U1I2	DnaJ-like protein subfamily A member 2.	DnaJ-like protein subfamily C member 10.	0.668