STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_020631Thrombospondin-1. (1056 aa)    
Predicted Functional Partners:
D9C73_024771
Platelet glycoprotein 4; Belongs to the CD36 family.
   
 0.886
D9C73_024876
Platelet glycoprotein 4; Belongs to the CD36 family.
   
 0.886
D9C73_024871
Platelet glycoprotein 4; Belongs to the CD36 family.
   
 0.886
D9C73_000835
Integrin beta; Belongs to the integrin beta chain family.
   
 0.879
D9C73_024306
Integrin beta.
   
 0.875
D9C73_003728
Integrin beta; Belongs to the integrin beta chain family.
    
 0.871
D9C73_014383
Integrin beta; Belongs to the integrin beta chain family.
   
 0.871
D9C73_014353
Integrin beta; Belongs to the integrin beta chain family.
   
 0.871
D9C73_023762
Integrin beta.
   
 0.867
D9C73_023763
Integrin beta-3.
   
 0.867
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.