STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_020948Putative nuclease HARBI1. (435 aa)    
Predicted Functional Partners:
D9C73_015592
Sortilin-related receptor.
    
 0.856
D9C73_020014
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.819
D9C73_011746
Neurotrophin-7; Belongs to the NGF-beta family.
    
 0.739
D9C73_025241
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
    
 0.739
D9C73_026352
Neurotrophin-4; Belongs to the NGF-beta family.
    
 0.739
D9C73_025522
Tumor necrosis factor receptor superfamily member 16.
    
  0.714
D9C73_005829
Nerve growth factor; Belongs to the NGF-beta family.
     
 0.685
D9C73_004306
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
     
 0.683
D9C73_007982
Kit ligand.
     
 0.664
D9C73_014529
Uncharacterized protein.
    
  0.630
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.