STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_025700Collagen alpha-1(XI) chain. (581 aa)    
Predicted Functional Partners:
D9C73_028082
Muscle M-line assembly protein unc-89.
    
  0.802
D9C73_001365
Collagen alpha-2(VI) chain.
  
0.612
D9C73_013873
Collagen alpha-2(I) chain.
  
 
  0.566
D9C73_013515
Collagen alpha-1(VI) chain.
  
 
0.561
D9C73_014287
Telomerase protein component 1.
    
  0.546
D9C73_014328
DNA ligase 1.
    
 0.539
D9C73_003728
Integrin beta; Belongs to the integrin beta chain family.
    
 0.532
D9C73_024306
Integrin beta.
   
 0.532
D9C73_004673
Complement C1q subcomponent subunit C.
  
 
 
0.531
D9C73_004694
Complement C1q subcomponent subunit C.
  
 
 
0.530
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.