STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_026974Splicing factor 3B subunit 2. (870 aa)    
Predicted Functional Partners:
D9C73_007139
Splicing factor 3B subunit 3.
   
 0.995
D9C73_012108
Splicing factor 3A subunit 1.
   
 0.995
D9C73_023266
Splicing factor 3B subunit 4.
   
 0.995
D9C73_024228
PHD finger-like domain-containing protein 5A.
    
 0.995
D9C73_009984
Splicing factor 3B subunit 6.
    
 0.994
D9C73_013804
Splicing factor 3A subunit 2 SF3a66.
   
 0.990
D9C73_017237
Putative ATP-dependent RNA helicase DDX46.
   
 0.987
D9C73_023147
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.986
D9C73_000809
Splicing factor 3B subunit 1.
   
 0.985
D9C73_000816
Splicing factor 3B subunit 1.
   
 0.985
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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