STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_025368E3 ubiquitin-protein ligase TRAF7. (734 aa)    
Predicted Functional Partners:
D9C73_019723
Zinc finger protein 4.
    
 0.987
D9C73_007899
Uncharacterized protein.
    
  0.986
D9C73_008427
L40 Ubiquitin 60S ribosomal protein.
    
  0.986
D9C73_020210
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_020216
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_020209
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_020215
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_020208
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_020211
Baculoviral IAP repeat-containing protein 6.
    
 0.982
D9C73_012244
Ubiquitin-like protein 4A.
    
 0.979
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.