STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_025323Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (3376 aa)    
Predicted Functional Partners:
D9C73_016006
Protein SMG9.
    
 0.988
D9C73_014503
Protein SMG7 EST1-like protein C SMG-7-like protein.
   
 0.987
D9C73_017376
Protein SMG8.
   
 0.987
D9C73_008430
Regulator of nonsense transcripts 1.
    
 0.985
D9C73_013736
Regulator of nonsense transcripts 1.
    
 0.985
D9C73_006448
Eukaryotic peptide chain release factor subunit 1.
    
 
 0.973
D9C73_024184
Target of rapamycin complex subunit lst8.
    
 0.971
D9C73_001996
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 
 0.969
D9C73_008178
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 
 0.963
D9C73_016629
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.963
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.