STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_000118G2/M phase-specific E3 ubiquitin-protein ligase. (511 aa)    
Predicted Functional Partners:
D9C73_005114
Retinoblastoma-binding protein 5.
    
 0.776
D9C73_018185
Set1/Ash2 histone methyltransferase complex subunit ASH2 ASH2-like protein.
    
 0.739
D9C73_018175
Set1/Ash2 histone methyltransferase complex subunit ASH2 ASH2-like protein.
    
 0.739
D9C73_002873
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.703
D9C73_000992
M-phase phosphoprotein 8.
    
 0.690
D9C73_008565
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 0.674
D9C73_000460
Polycomb protein eed.
   
 0.640
D9C73_000439
Polycomb protein eed.
   
 0.640
D9C73_003300
Histone-lysine N-methyltransferase PRDM9.
   
 0.632
D9C73_003308
Histone-lysine N-methyltransferase PRDM9.
   
 0.632
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.