STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D9C73_008013Rhombotin-1 LIM domain only protein 1. (154 aa)    
Predicted Functional Partners:
D9C73_001995
Serum response factor.
    
 0.586
D9C73_020013
Serum response factor.
    
 0.586
D9C73_003167
LIM domain-binding protein 1.
    
 0.548
D9C73_006119
LIM domain-binding protein 2.
    
 0.548
D9C73_019757
LIM domain-binding protein 1.
    
 0.548
D9C73_022002
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.512
D9C73_008513
LIM/homeobox protein.
    
0.491
D9C73_018848
LIM/homeobox protein.
    
0.491
D9C73_002081
Zinc finger protein 1 GATA-like protein 1.
    
 0.456
D9C73_005581
GATA-binding factor 2.
    
 0.456
Your Current Organism:
Collichthys lucidus
NCBI taxonomy Id: 240159
Other names: C. lucidus, Sciaena lucida, big head croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.