STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_06981Transcription activator snf2l1. (1102 aa)    
Predicted Functional Partners:
CC1G_03672
Uncharacterized protein.
    
 0.993
CC1G_00568
Histone acetyltransferase type B subunit 2.
   
 0.970
CC1G_10921
PHD domain-containing protein.
    
 0.960
CC1G_12238
CBFD_NFYB_HMF domain-containing protein.
    
 0.957
CC1G_05458
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.947
CC1G_05764
Uncharacterized protein.
    
 0.935
CC1G_08736
Histone H2A; Belongs to the histone H2A family.
   
 0.918
CC1G_07639
Histone H2B; Belongs to the histone H2B family.
   
 0.877
CC1G_03523
Histone H2B; Belongs to the histone H2B family.
   
 0.877
CC1G_04396
Histone H3; Belongs to the histone H3 family.
   
 0.852
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.