STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_04740Transcription initiation factor IIB. (340 aa)    
Predicted Functional Partners:
CC1G_11216
PHD-type domain-containing protein.
    
 0.974
CC1G_11509
Transcription initiation factor TFIID-1.
   
 0.973
CC1G_04529
DNA-directed RNA polymerase II subunit.
   
 0.971
CC1G_02535
Transcription initiation factor TFIIE alpha subunit.
    
 0.971
CC1G_06442
DNA-directed RNA polymerase I.
    
 0.971
CC1G_09096
Uncharacterized protein.
    
 0.971
CC1G_14627
Uncharacterized protein.
    
 0.971
CC1G_11229
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.970
CC1G_15845
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.970
CC1G_01891
DNA-directed RNA polymerase II polypeptide.
    
 0.970
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130
Server load: low (12%) [HD]