STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1G_02580Farnesyldiphosphatesynthetase; Belongs to the FPP/GGPP synthase family. (402 aa)    
Predicted Functional Partners:
CC1G_11292
Isopentenyl-diphosphate Delta-isomerase.
  
 
 0.988
CC1G_02299
Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.
  
 0.987
CC1G_04609
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
 0.982
CC1G_00492
Trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
 0.971
CC1G_05865
Decaprenyl-diphosphate synthase subunit 1.
    
 0.971
CC1G_03978
Squalene synthase.
  
 0.970
CC1G_08115
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.963
CC1G_04052
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.963
CC1G_07486
Farnesyltransferase/geranylgeranyltransferase type I alpha subunit.
     
 0.958
CC1G_05578
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
 0.953
Your Current Organism:
Coprinopsis cinerea
NCBI taxonomy Id: 240176
Other names: C. cinerea okayama7#130, Coprinopsis cinerea okayama7#130, Coprinus cinereus okayama7#130
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