Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ava_0100Protein of unknown function DUF820. (194 aa)    
Predicted Functional Partners:
Ava_3711
Protein of unknown function DUF820.
  
     0.621
Ava_3926
Protein of unknown function DUF820.
  
     0.596
Ava_0099
Protein of unknown function UPF0150.
       0.508
Ava_1088
Protein of unknown function DUF820.
  
     0.497
Ava_2309
Protein of unknown function DUF820.
  
     0.492
Ava_0998
Protein of unknown function DUF820.
  
     0.476
Ava_0101
C-5 cytosine-specific DNA methylase.
       0.466
Ava_3149
Protein of unknown function DUF820.
  
     0.463
Ava_1502
Protein of unknown function DUF820.
  
     0.456
Ava_3700
Hypothetical protein.
  
     0.456
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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