Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_0137 | Ava_0147 | Ava_0137 | Ava_0147 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | L-glutamine synthetase. | 0.598 |
Ava_0137 | Ava_1294 | Ava_0137 | Ava_1294 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate synthase (ferredoxin). | 0.670 |
Ava_0137 | Ava_2898 | Ava_0137 | Ava_2898 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Conserved hypothetical protein. | 0.968 |
Ava_0137 | Ava_2954 | Ava_0137 | Ava_2954 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Ammonium transporter. | 0.977 |
Ava_0137 | Ava_2955 | Ava_0137 | Ava_2955 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Ammonium transporter. | 0.989 |
Ava_0137 | Ava_2956 | Ava_0137 | Ava_2956 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Ammonium transporter. | 0.967 |
Ava_0137 | argB | Ava_0137 | Ava_0554 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.985 |
Ava_0137 | cynS | Ava_0137 | Ava_3015 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Cyanase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | 0.704 |
Ava_0137 | nifH | Ava_0137 | Ava_4046 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.558 |
Ava_0137 | vnfH | Ava_0137 | Ava_4054 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.557 |
Ava_0147 | Ava_0137 | Ava_0147 | Ava_0137 | L-glutamine synthetase. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.598 |
Ava_0147 | Ava_1294 | Ava_0147 | Ava_1294 | L-glutamine synthetase. | Glutamate synthase (ferredoxin). | 0.988 |
Ava_0147 | Ava_2954 | Ava_0147 | Ava_2954 | L-glutamine synthetase. | Ammonium transporter. | 0.439 |
Ava_0147 | Ava_2955 | Ava_0147 | Ava_2955 | L-glutamine synthetase. | Ammonium transporter. | 0.439 |
Ava_0147 | Ava_2956 | Ava_0147 | Ava_2956 | L-glutamine synthetase. | Ammonium transporter. | 0.436 |
Ava_0147 | nifH | Ava_0147 | Ava_4046 | L-glutamine synthetase. | Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.912 |
Ava_0147 | vnfH | Ava_0147 | Ava_4054 | L-glutamine synthetase. | Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.912 |
Ava_1294 | Ava_0137 | Ava_1294 | Ava_0137 | Glutamate synthase (ferredoxin). | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.670 |
Ava_1294 | Ava_0147 | Ava_1294 | Ava_0147 | Glutamate synthase (ferredoxin). | L-glutamine synthetase. | 0.988 |
Ava_1294 | Ava_2954 | Ava_1294 | Ava_2954 | Glutamate synthase (ferredoxin). | Ammonium transporter. | 0.876 |
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