STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_0146Allophycocyanin, beta subunit. (169 aa)    
Predicted Functional Partners:
Ava_2620
Phycobilisome protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.992
Ava_2623
CpcD phycobilisome linker-like protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
 
 
 
 0.992
Ava_2932
CpcD phycobilisome linker-like protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.991
Ava_2938
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.974
Ava_2939
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.971
Ava_3635
Phycobilisome protein.
 
 
 
0.968
Ava_2621
Phycobilisome protein.
 
 
 
0.965
Ava_2622
Allophycocyanin, beta subunit.
  
 
 
0.959
Ava_2930
Phycocyanin, beta subunit.
  
 
 
0.959
Ava_2927
CpcD phycobilisome linker-like protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.923
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.