STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_0199Cyclase/dehydrase; Similar to Streptomyces cyclase/dehydrogenase. (151 aa)    
Predicted Functional Partners:
Ava_0200
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
 
     0.805
Ava_0386
Conserved hypothetical protein.
  
     0.745
Ava_0477
Conserved hypothetical protein.
  
     0.707
Ava_3434
Conserved hypothetical protein.
  
     0.705
Ava_1686
Conserved hypothetical protein.
  
     0.691
Ava_1843
Photosystem II manganese-stabilizing protein PsbO.
  
     0.681
Ava_2159
Protein of unknown function DUF1092.
  
    0.675
Ava_1879
Conserved hypothetical protein.
  
     0.669
Ava_2081
Conserved hypothetical protein.
  
     0.664
thf1
Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis.
  
     0.636
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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