STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_0227HNH endonuclease. (149 aa)    
Predicted Functional Partners:
Ava_0228
Conserved hypothetical protein.
       0.744
Ava_0229
Tetratricopeptide TPR_3.
 
     0.656
Ava_3700
Hypothetical protein.
  
     0.612
Ava_0215
Protein of unknown function DUF820.
  
     0.519
Ava_2988
Conserved hypothetical protein.
  
     0.513
Ava_1875
Protein of unknown function DUF820.
  
     0.488
Ava_4703
Conserved hypothetical protein.
 
    0.451
Ava_2625
Conserved hypothetical protein.
  
     0.447
Ava_0171
Hypothetical protein.
  
     0.435
Ava_3344
Protein of unknown function DUF820.
  
     0.427
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.