Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_1655 | Ava_2265 | Ava_1655 | Ava_2265 | Transketolase. | ROK. | 0.822 |
Ava_1655 | Ava_2492 | Ava_1655 | Ava_2492 | Transketolase. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. | 0.949 |
Ava_1655 | Ava_3645 | Ava_1655 | Ava_3645 | Transketolase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.900 |
Ava_1655 | Ava_4014 | Ava_1655 | Ava_4014 | Transketolase. | Polyphosphate glucokinase. | 0.822 |
Ava_1655 | Ava_4339 | Ava_1655 | Ava_4339 | Transketolase. | Glucokinase. | 0.822 |
Ava_1655 | glk | Ava_1655 | Ava_0933 | Transketolase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.847 |
Ava_1655 | pgi | Ava_1655 | Ava_3708 | Transketolase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.968 |
Ava_1655 | tal | Ava_1655 | Ava_0493 | Transketolase. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. | 0.983 |
Ava_1655 | zwf | Ava_1655 | Ava_1682 | Transketolase. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.623 |
Ava_2265 | Ava_1655 | Ava_2265 | Ava_1655 | ROK. | Transketolase. | 0.822 |
Ava_2265 | Ava_2448 | Ava_2265 | Ava_2448 | ROK. | 2-keto-3-deoxy-phosphogluconate aldolase. | 0.812 |
Ava_2265 | Ava_2492 | Ava_2265 | Ava_2492 | ROK. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. | 0.839 |
Ava_2265 | Ava_3645 | Ava_2265 | Ava_3645 | ROK. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.822 |
Ava_2265 | Ava_4014 | Ava_2265 | Ava_4014 | ROK. | Polyphosphate glucokinase. | 0.904 |
Ava_2265 | Ava_4339 | Ava_2265 | Ava_4339 | ROK. | Glucokinase. | 0.924 |
Ava_2265 | glk | Ava_2265 | Ava_0933 | ROK. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.915 |
Ava_2265 | pgi | Ava_2265 | Ava_3708 | ROK. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.921 |
Ava_2265 | tal | Ava_2265 | Ava_0493 | ROK. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. | 0.832 |
Ava_2265 | zwf | Ava_2265 | Ava_1682 | ROK. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.842 |
Ava_2448 | Ava_2265 | Ava_2448 | Ava_2265 | 2-keto-3-deoxy-phosphogluconate aldolase. | ROK. | 0.812 |
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