STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_1552Serine/threonine protein kinase with TPR repeats. (707 aa)    
Predicted Functional Partners:
Ava_0419
TPR repeat protein.
 
 
 0.696
Ava_0402
Protein serine/threonine phosphatase.
 
 
 0.627
Ava_4645
Adenylate/guanylate cyclase.
 
 
 0.625
Ava_3382
Protein serine/threonine phosphatase.
 
 
 0.622
Ava_0304
Protein serine/threonine phosphatase.
 
 
 0.621
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.573
Ava_1153
Serine/threonine protein kinase.
  
    0.571
Ava_1551
Rhomboid-like protein.
  
    0.571
Ava_4696
GAF sensor hybrid histidine kinase.
  
 
 0.564
Ava_0353
Serine/Threonine protein kinase with FHA domain modulation.
 
 
0.540
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.