Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ava_0556 | Ava_0725 | Conserved hypothetical protein. | Peptidase, metallopeptidase. | 0.570 |
Ava_0556 | Ava_1006 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.750 |
Ava_0556 | Ava_1696 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.710 |
Ava_0556 | Ava_1733 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.528 |
Ava_0556 | Ava_2580 | Conserved hypothetical protein. | TPR repeat protein. | 0.732 |
Ava_0556 | Ava_3280 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.563 |
Ava_0556 | Ava_3509 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.533 |
Ava_0556 | Ava_3754 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.628 |
Ava_0556 | Ava_3803 | Conserved hypothetical protein. | GCN5-related N-acetyltransferase. | 0.582 |
Ava_0556 | Ava_4430 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.680 |
Ava_0725 | Ava_0556 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.570 |
Ava_0725 | Ava_1006 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.672 |
Ava_0725 | Ava_1696 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.758 |
Ava_0725 | Ava_1733 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.438 |
Ava_0725 | Ava_2580 | Peptidase, metallopeptidase. | TPR repeat protein. | 0.525 |
Ava_0725 | Ava_3280 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.601 |
Ava_0725 | Ava_3754 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.742 |
Ava_0725 | Ava_4430 | Peptidase, metallopeptidase. | Conserved hypothetical protein. | 0.425 |
Ava_1006 | Ava_0556 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.750 |
Ava_1006 | Ava_0725 | Conserved hypothetical protein. | Peptidase, metallopeptidase. | 0.672 |
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