STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_2010CsbD-like protein; Belongs to the UPF0337 (CsbD) family. (60 aa)    
Predicted Functional Partners:
Ava_4901
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein.
  
    0.781
Ava_1656
Conserved hypothetical protein.
 
    0.703
Ava_1657
Conserved hypothetical protein.
 
    0.683
Ava_0870
Conserved hypothetical protein.
  
     0.663
Ava_2036
Conserved hypothetical protein.
 
  
 0.639
Ava_0596
Transport-associated protein.
 
  
 0.622
Ava_0431
Conserved hypothetical protein.
  
     0.616
Ava_0594
Conserved hypothetical protein.
  
     0.594
Ava_1658
Conserved hypothetical protein.
 
    0.576
Ava_0585
Conserved hypothetical protein.
  
     0.575
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.