STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_2013Conserved hypothetical protein. (121 aa)    
Predicted Functional Partners:
Ava_2014
Conserved hypothetical protein.
       0.752
rpoZ
RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.707
Ava_3158
Conserved hypothetical protein.
  
     0.649
Ava_2513
Conserved hypothetical protein; Belongs to the UPF0367 family.
  
     0.620
Ava_2529
Conserved hypothetical protein.
  
     0.598
Ava_0205
Conserved hypothetical protein.
  
     0.596
Ava_3521
Conserved hypothetical protein.
  
     0.576
Ava_2059
Conserved hypothetical protein.
  
     0.571
Ava_1580
Conserved hypothetical protein.
  
     0.570
Ava_3896
Conserved hypothetical protein.
  
     0.559
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.