STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_2166Conserved hypothetical protein. (456 aa)    
Predicted Functional Partners:
Ava_1699
Conserved hypothetical protein.
 
     0.779
Ava_3365
S-layer region-like protein; Belongs to the OprB family.
  
     0.723
Ava_1637
Permease YjgP/YjgQ.
 
     0.718
Ava_2510
S-layer region-like protein; Belongs to the OprB family.
  
     0.708
Ava_4440
S-layer region-like protein; Belongs to the OprB family.
  
     0.687
Ava_0094
Surface antigen variable number.
 
     0.679
Ava_3282
Conserved hypothetical protein.
 
     0.619
Ava_3281
Resolvase, RNase H-like fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.609
Ava_1789
NAD-dependent epimerase/dehydratase.
  
     0.608
Ava_4140
S-layer region-like protein; Belongs to the OprB family.
  
     0.601
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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