STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_2183Peptidase C14, caspase catalytic subunit p20. (1557 aa)    
Predicted Functional Partners:
Ava_2184
Peptidase C14, caspase catalytic subunit p20.
 
   
0.851
Ava_3246
Peptidase C14, caspase catalytic subunit p20.
 
   
 0.793
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
      
 0.660
Ava_2182
Hypothetical protein.
 
     0.649
Ava_4137
TPR repeat protein.
 
 
  0.566
Ava_0039
Peptidase C14, caspase catalytic subunit p20.
 
   
0.541
Ava_3079
Peptidase C14, caspase catalytic subunit p20.
 
   
0.529
Ava_3483
TPR repeat protein.
 
     0.518
Ava_1493
Small GTP-binding protein domain protein.
 
 
 0.502
Ava_4183
Tetratricopeptide TPR_4.
 
 
  0.495
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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