STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_2276Transcriptional regulator, TetR family. (403 aa)    
Predicted Functional Partners:
Ava_0086
Conserved hypothetical protein.
  
     0.729
Ava_1658
Conserved hypothetical protein.
  
     0.610
Ava_4678
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
     0.546
Ava_2010
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
     0.501
Ava_1535
Conserved hypothetical protein.
  
     0.496
Ava_2277
Delta-9 acyl-phospholipid desaturase.
       0.483
Ava_1530
Conserved hypothetical protein.
  
     0.482
Ava_2758
Conserved hypothetical protein.
  
     0.482
Ava_0033
Conserved hypothetical protein.
  
     0.473
Ava_2225
Metallophosphoesterase.
  
     0.465
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.