STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_3295TPR repeat protein. (311 aa)    
Predicted Functional Partners:
Ava_2004
TPR repeat protein.
 
     0.761
Ava_0346
TPR repeat protein.
 
   0.636
Ava_2394
Conserved hypothetical protein.
 
   0.587
Ava_3296
Conserved hypothetical protein.
       0.581
Ava_3294
Translation elongation factor 2 (EF-2/EF-G).
   
   0.485
Ava_1178
TPR repeat protein.
    
0.467
Ava_3483
TPR repeat protein.
 
 0.459
Ava_0141
Heat shock protein Hsp90.
   
 0.455
Ava_0662
Response regulator receiver (CheY) and GAF modulated Serine phosphatase.
 
 
 0.447
dnaK-2
Heat shock protein Hsp70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.446
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.