Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ava_0238 | Ava_0278 | Multi-component transcriptional regulator, winged helix family. | Serine phosphatase. | 0.813 |
Ava_0238 | Ava_1029 | Multi-component transcriptional regulator, winged helix family. | Multi-sensor hybrid histidine kinase. | 0.994 |
Ava_0238 | Ava_1279 | Multi-component transcriptional regulator, winged helix family. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.763 |
Ava_0238 | Ava_1564 | Multi-component transcriptional regulator, winged helix family. | Multi-sensor hybrid histidine kinase. | 0.996 |
Ava_0238 | Ava_1567 | Multi-component transcriptional regulator, winged helix family. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.763 |
Ava_0238 | Ava_2070 | Multi-component transcriptional regulator, winged helix family. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.763 |
Ava_0238 | Ava_3443 | Multi-component transcriptional regulator, winged helix family. | Putative Anti-Sigma regulatory factor (Ser/Thr protein kinase). | 0.858 |
Ava_0238 | Ava_3722 | Multi-component transcriptional regulator, winged helix family. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.763 |
Ava_0238 | Ava_4580 | Multi-component transcriptional regulator, winged helix family. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.763 |
Ava_0238 | Ava_4779 | Multi-component transcriptional regulator, winged helix family. | Multi-sensor hybrid histidine kinase. | 0.997 |
Ava_0278 | Ava_0238 | Serine phosphatase. | Multi-component transcriptional regulator, winged helix family. | 0.813 |
Ava_0278 | Ava_1029 | Serine phosphatase. | Multi-sensor hybrid histidine kinase. | 0.755 |
Ava_0278 | Ava_1279 | Serine phosphatase. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.675 |
Ava_0278 | Ava_1564 | Serine phosphatase. | Multi-sensor hybrid histidine kinase. | 0.886 |
Ava_0278 | Ava_1567 | Serine phosphatase. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.850 |
Ava_0278 | Ava_2070 | Serine phosphatase. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.784 |
Ava_0278 | Ava_3443 | Serine phosphatase. | Putative Anti-Sigma regulatory factor (Ser/Thr protein kinase). | 0.804 |
Ava_0278 | Ava_3722 | Serine phosphatase. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.872 |
Ava_0278 | Ava_4580 | Serine phosphatase. | Anti-Sigma-factor antagonist (STAS) domain protein. | 0.824 |
Ava_0278 | Ava_4779 | Serine phosphatase. | Multi-sensor hybrid histidine kinase. | 0.672 |
page 1 of 5